initial commit

master
ThirstyShark 5 years ago
commit 558139141c

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<?xml version="1.0" encoding="UTF-8"?>
<!-- You may freely edit this file. See commented blocks below for -->
<!-- some examples of how to customize the build. -->
<!-- (If you delete it and reopen the project it will be recreated.) -->
<!-- By default, only the Clean and Build commands use this build script. -->
<!-- Commands such as Run, Debug, and Test only use this build script if -->
<!-- the Compile on Save feature is turned off for the project. -->
<!-- You can turn off the Compile on Save (or Deploy on Save) setting -->
<!-- in the project's Project Properties dialog box.-->
<project name="CancerGrowth" default="default" basedir=".">
<description>Builds, tests, and runs the project CancerGrowth.</description>
<import file="nbproject/build-impl.xml"/>
<!--
There exist several targets which are by default empty and which can be
used for execution of your tasks. These targets are usually executed
before and after some main targets. They are:
-pre-init: called before initialization of project properties
-post-init: called after initialization of project properties
-pre-compile: called before javac compilation
-post-compile: called after javac compilation
-pre-compile-single: called before javac compilation of single file
-post-compile-single: called after javac compilation of single file
-pre-compile-test: called before javac compilation of JUnit tests
-post-compile-test: called after javac compilation of JUnit tests
-pre-compile-test-single: called before javac compilation of single JUnit test
-post-compile-test-single: called after javac compilation of single JUunit test
-pre-jar: called before JAR building
-post-jar: called after JAR building
-post-clean: called after cleaning build products
(Targets beginning with '-' are not intended to be called on their own.)
Example of inserting an obfuscator after compilation could look like this:
<target name="-post-compile">
<obfuscate>
<fileset dir="${build.classes.dir}"/>
</obfuscate>
</target>
For list of available properties check the imported
nbproject/build-impl.xml file.
Another way to customize the build is by overriding existing main targets.
The targets of interest are:
-init-macrodef-javac: defines macro for javac compilation
-init-macrodef-junit: defines macro for junit execution
-init-macrodef-debug: defines macro for class debugging
-init-macrodef-java: defines macro for class execution
-do-jar: JAR building
run: execution of project
-javadoc-build: Javadoc generation
test-report: JUnit report generation
An example of overriding the target for project execution could look like this:
<target name="run" depends="CancerGrowth-impl.jar">
<exec dir="bin" executable="launcher.exe">
<arg file="${dist.jar}"/>
</exec>
</target>
Notice that the overridden target depends on the jar target and not only on
the compile target as the regular run target does. Again, for a list of available
properties which you can use, check the target you are overriding in the
nbproject/build-impl.xml file.
-->
</project>

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#Wed, 30 Jan 2019 20:03:25 -0600
C\:\\Users\\cd109\\Desktop\\apcs\\Projects\\chapter-03\\CancerGrowth=

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32
dist/README.TXT vendored

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========================
BUILD OUTPUT DESCRIPTION
========================
When you build an Java application project that has a main class, the IDE
automatically copies all of the JAR
files on the projects classpath to your projects dist/lib folder. The IDE
also adds each of the JAR files to the Class-Path element in the application
JAR files manifest file (MANIFEST.MF).
To run the project from the command line, go to the dist folder and
type the following:
java -jar "CancerGrowth.jar"
To distribute this project, zip up the dist folder (including the lib folder)
and distribute the ZIP file.
Notes:
* If two JAR files on the project classpath have the same name, only the first
JAR file is copied to the lib folder.
* Only JAR files are copied to the lib folder.
If the classpath contains other types of files or folders, these files (folders)
are not copied.
* If a library on the projects classpath also has a Class-Path element
specified in the manifest,the content of the Class-Path element has to be on
the projects runtime path.
* To set a main class in a standard Java project, right-click the project node
in the Projects window and choose Properties. Then click Run and enter the
class name in the Main Class field. Alternatively, you can manually type the
class name in the manifest Main-Class element.

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Manifest-Version: 1.0
X-COMMENT: Main-Class will be added automatically by build

File diff suppressed because it is too large Load Diff

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build.xml.data.CRC32=fac1c412
build.xml.script.CRC32=cb6c7ccd
build.xml.stylesheet.CRC32=8064a381@1.80.1.48
# This file is used by a NetBeans-based IDE to track changes in generated files such as build-impl.xml.
# Do not edit this file. You may delete it but then the IDE will never regenerate such files for you.
nbproject/build-impl.xml.data.CRC32=fac1c412
nbproject/build-impl.xml.script.CRC32=0dd90c6f
nbproject/build-impl.xml.stylesheet.CRC32=830a3534@1.80.1.48

@ -0,0 +1,6 @@
compile.on.save=false
do.depend=false
do.jar=true
javac.debug=true
javadoc.preview=true
user.properties.file=C:\\Users\\cd109\\AppData\\Roaming\\NetBeans\\8.2\\build.properties

@ -0,0 +1,11 @@
<?xml version="1.0" encoding="UTF-8"?>
<project-private xmlns="http://www.netbeans.org/ns/project-private/1">
<editor-bookmarks xmlns="http://www.netbeans.org/ns/editor-bookmarks/2" lastBookmarkId="0"/>
<open-files xmlns="http://www.netbeans.org/ns/projectui-open-files/2">
<group>
<file>file:/C:/Users/cd109/Desktop/apcs/Projects/chapter-03/CancerGrowth/src/cancergrowth/CellPanel.java</file>
<file>file:/C:/Users/cd109/Desktop/apcs/Projects/chapter-03/CancerGrowth/src/cancergrowth/CancerGrowth.java</file>
<file>file:/C:/Users/cd109/Desktop/apcs/Projects/chapter-03/CancerGrowth/src/cancergrowth/Cell.java</file>
</group>
</open-files>
</project-private>

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annotation.processing.enabled=true
annotation.processing.enabled.in.editor=false
annotation.processing.processors.list=
annotation.processing.run.all.processors=true
annotation.processing.source.output=${build.generated.sources.dir}/ap-source-output
application.title=CancerGrowth
application.vendor=cd109
build.classes.dir=${build.dir}/classes
build.classes.excludes=**/*.java,**/*.form
# This directory is removed when the project is cleaned:
build.dir=build
build.generated.dir=${build.dir}/generated
build.generated.sources.dir=${build.dir}/generated-sources
# Only compile against the classpath explicitly listed here:
build.sysclasspath=ignore
build.test.classes.dir=${build.dir}/test/classes
build.test.results.dir=${build.dir}/test/results
# Uncomment to specify the preferred debugger connection transport:
#debug.transport=dt_socket
debug.classpath=\
${run.classpath}
debug.test.classpath=\
${run.test.classpath}
# Files in build.classes.dir which should be excluded from distribution jar
dist.archive.excludes=
# This directory is removed when the project is cleaned:
dist.dir=dist
dist.jar=${dist.dir}/CancerGrowth.jar
dist.javadoc.dir=${dist.dir}/javadoc
endorsed.classpath=
excludes=
includes=**
jar.compress=false
javac.classpath=\
${libs.swing-layout.classpath}
# Space-separated list of extra javac options
javac.compilerargs=
javac.deprecation=false
javac.external.vm=true
javac.processorpath=\
${javac.classpath}
javac.source=1.8
javac.target=1.8
javac.test.classpath=\
${javac.classpath}:\
${build.classes.dir}
javac.test.processorpath=\
${javac.test.classpath}
javadoc.additionalparam=
javadoc.author=false
javadoc.encoding=${source.encoding}
javadoc.noindex=false
javadoc.nonavbar=false
javadoc.notree=false
javadoc.private=false
javadoc.splitindex=true
javadoc.use=true
javadoc.version=false
javadoc.windowtitle=
main.class=cancergrowth.CancerGrowth
manifest.file=manifest.mf
meta.inf.dir=${src.dir}/META-INF
mkdist.disabled=false
platform.active=default_platform
run.classpath=\
${javac.classpath}:\
${build.classes.dir}
# Space-separated list of JVM arguments used when running the project.
# You may also define separate properties like run-sys-prop.name=value instead of -Dname=value.
# To set system properties for unit tests define test-sys-prop.name=value:
run.jvmargs=
run.test.classpath=\
${javac.test.classpath}:\
${build.test.classes.dir}
source.encoding=UTF-8
src.dir=src
test.src.dir=test

@ -0,0 +1,15 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://www.netbeans.org/ns/project/1">
<type>org.netbeans.modules.java.j2seproject</type>
<configuration>
<data xmlns="http://www.netbeans.org/ns/j2se-project/3">
<name>CancerGrowth</name>
<source-roots>
<root id="src.dir"/>
</source-roots>
<test-roots>
<root id="test.src.dir"/>
</test-roots>
</data>
</configuration>
</project>

@ -0,0 +1,29 @@
package cancergrowth;
/*
* File Name: CancerGrowth.java
* Created: Oct 4, 2017
*/
public class CancerGrowth extends javax.swing.JFrame
{
//Constructor code for the frame
public CancerGrowth(String s)
{
super(s);
super.setContentPane(new CellPanel());
super.setDefaultCloseOperation(javax.swing.JFrame.EXIT_ON_CLOSE);
super.setLocation(50, 50);
super.setResizable(false);
super.pack();
}
//<editor-fold defaultstate="collapsed" desc="--This method will launch your application--">
public static void main(String[] args)
{
javax.swing.JFrame.setDefaultLookAndFeelDecorated(false);
java.awt.EventQueue.invokeLater(new Runnable() { public void run() { new CancerGrowth("Cancer Simulation").setVisible(true); } } );
}
//</editor-fold>
}

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package cancergrowth;
import java.awt.Color;
import java.awt.Image;
import java.awt.Graphics;
import java.awt.image.BufferedImage;
import java.lang.Math;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.util.ArrayList;
import java.util.Scanner;
/*
* File Name: Cell.java
* Created: Nov 7, 2018
* Author:
*/
public class Cell extends Object
{
private int xval;
private int yval;
private Color myColor;
private ArrayList<Integer> stages = new ArrayList<Integer>();
private int currentStage;
private int currentTime;
public Cell(int x, int y, Color C)
{
xval = x;
yval = y;
myColor = C;
stages.add(10 + (int) (Math.random() * 3 - 1));
stages.add(6 + (int) (Math.random() * 3 - 1));
stages.add(3 + (int) (Math.random() * 3 - 1));
stages.add(1 + (int) (Math.random() * 2));
currentTime = 0;
currentStage = 0;
}
@Override
public String toString()
{
return "(" + xval + ", " + yval + ")";
}
public int getX()
{
return xval;
}
public int getY()
{
return yval;
}
public Color getColor()
{
return myColor;
}
public int moveTo(int x, int y)
{
xval = x;
yval = y;
return 0;
}
public Cell performTime() {
this.currentTime ++;
Cell newcell = this;
//System.out.println("Increased Current Time to:" + this.currentTime);
if(this.currentTime > stages.get(this.currentStage)) {
if(currentStage == 3) {
// SPLIT
int width = (int) (-50 + Math.random()*101);
int height = (int) (-50 + Math.random()*101);
while (width < 20 && width > -20) width = (int) (-50 + Math.random()*101);
while (height < 20 && height > -20) height = (int) (-50 + Math.random()*101);
newcell = new Cell(xval + width, yval + height, new Color(255, 0, 0, 100));
//stages = new ArrayList<Integer>();
//stages.add(10 + (int) Math.random() * 3 - 1);
//stages.add(7 + (int) Math.random() * 3 - 1);
//stages.add(3 + (int) Math.random() * 3 - 1);
//stages.add(1 + (int) Math.random() * 2);
xval -= width;
yval -= height;
currentStage = 0;
currentTime = 1;
myColor = new Color(255, 0, 0, 100);
}
else {
this.currentStage ++;
this.currentTime = 0;
if(currentStage == 1) myColor = new Color(255, 255, 0, 100);
if(currentStage == 2) myColor = new Color(0, 255, 0, 100);
if(currentStage == 3) myColor = new Color(0, 0, 255, 100);
}
}
return newcell;
}
public Image getImage()
{
Image canvas = new BufferedImage(50, 50, BufferedImage.TYPE_INT_ARGB);
Graphics g = canvas.getGraphics();
g.setColor(this.getColor());
int width = 50;
int pos = 0;
if (currentStage == 0) {
width = (int) ((currentTime + 1) * 2 + 22.5);
pos = (50 - width) / 2;
}
g.fillOval(pos, pos, width, width);
g.setColor(Color.BLACK);
g.drawOval(pos, pos, width, width);
StringBuilder x = new StringBuilder("");
if(currentStage == 0) x.append("G1");
if(currentStage == 1) x.append("S");
if(currentStage == 2) x.append("G2");
if(currentStage == 3) x.append("M");
g.drawString(x.toString(), 20, 30);
return canvas;
}
public Cell clone(int x, int y)
{
Cell out = new Cell(x, y, getColor());
return out;
}
public Cell combine(Cell in) {
int r = (this.getColor().getRed() + in.getColor().getRed()) / 2;
int g = (this.getColor().getGreen() + in.getColor().getGreen()) / 2;
int b = (this.getColor().getBlue() + in.getColor().getBlue()) / 2;
Cell out = new Cell((in.getX() + this.getX())/2, (in.getY() + this.getY())/2, new Color(r, g, b));
return out;
}
}

@ -0,0 +1,79 @@
<?xml version="1.0" encoding="UTF-8" ?>
<Form version="1.3" maxVersion="1.3" type="org.netbeans.modules.form.forminfo.JPanelFormInfo">
<AuxValues>
<AuxValue name="FormSettings_autoResourcing" type="java.lang.Integer" value="0"/>
<AuxValue name="FormSettings_autoSetComponentName" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_generateFQN" type="java.lang.Boolean" value="true"/>
<AuxValue name="FormSettings_generateMnemonicsCode" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_i18nAutoMode" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_layoutCodeTarget" type="java.lang.Integer" value="2"/>
<AuxValue name="FormSettings_listenerGenerationStyle" type="java.lang.Integer" value="0"/>
<AuxValue name="FormSettings_variablesLocal" type="java.lang.Boolean" value="false"/>
<AuxValue name="FormSettings_variablesModifier" type="java.lang.Integer" value="2"/>
</AuxValues>
<Layout>
<DimensionLayout dim="0">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<EmptySpace max="-2" attributes="0"/>
<Component id="speed" min="-2" max="-2" attributes="0"/>
<EmptySpace max="-2" attributes="0"/>
<Component id="jLabel1" min="-2" max="-2" attributes="0"/>
<EmptySpace pref="662" max="32767" attributes="0"/>
<Component id="jButton1" min="-2" max="-2" attributes="0"/>
<EmptySpace type="separate" max="-2" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
<DimensionLayout dim="1">
<Group type="103" groupAlignment="0" attributes="0">
<Group type="102" alignment="0" attributes="0">
<EmptySpace max="-2" attributes="0"/>
<Group type="103" groupAlignment="1" max="-2" attributes="0">
<Group type="103" alignment="0" groupAlignment="3" attributes="0">
<Component id="jButton1" alignment="3" pref="0" max="32767" attributes="0"/>
<Component id="jLabel1" alignment="3" min="-2" max="-2" attributes="0"/>
</Group>
<Component id="speed" alignment="0" max="32767" attributes="0"/>
</Group>
<EmptySpace pref="967" max="32767" attributes="0"/>
</Group>
</Group>
</DimensionLayout>
</Layout>
<SubComponents>
<Component class="javax.swing.JSlider" name="speed">
<Properties>
<Property name="maximum" type="int" value="1000"/>
<Property name="minimum" type="int" value="1"/>
<Property name="paintLabels" type="boolean" value="true"/>
<Property name="paintTicks" type="boolean" value="true"/>
<Property name="snapToTicks" type="boolean" value="true"/>
</Properties>
<Events>
<EventHandler event="mouseReleased" listener="java.awt.event.MouseListener" parameters="java.awt.event.MouseEvent" handler="speedMouseReleased"/>
</Events>
</Component>
<Component class="javax.swing.JLabel" name="jLabel1">
<Properties>
<Property name="font" type="java.awt.Font" editor="org.netbeans.beaninfo.editors.FontEditor">
<Font name="Dialog" size="18" style="1"/>
</Property>
<Property name="text" type="java.lang.String" value="Delay:"/>
</Properties>
</Component>
<Component class="javax.swing.JButton" name="jButton1">
<Properties>
<Property name="font" type="java.awt.Font" editor="org.netbeans.beaninfo.editors.FontEditor">
<Font name="Dialog" size="14" style="1"/>
</Property>
<Property name="text" type="java.lang.String" value="Start"/>
</Properties>
<Events>
<EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="jButton1ActionPerformed"/>
</Events>
</Component>
</SubComponents>
</Form>

@ -0,0 +1,218 @@
package cancergrowth;
/**
* File Name: CellPanel.java
* Created: Oct 02, 2017
* Author:
*/
import java.util.*;
import java.awt.Color;
import java.awt.Graphics;
import java.awt.Image;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.image.BufferedImage;
import java.util.concurrent.Executor;
import java.util.concurrent.Executors;
import javax.swing.Timer;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;
public class CellPanel extends javax.swing.JPanel implements ActionListener, ChangeListener
{
private Timer swingTimer;
//private JButton go;
//private JSlider speed;
private int delay;
private boolean growing = false;
int count = 0;
long time0 = System.nanoTime();
long time1 = time0;
private boolean draw = false;
ArrayList<Cell> cells = new ArrayList<Cell>();
Graphics g2;
Image canvas;
public CellPanel()
{
super();
this.initComponents();
//Cell t1 = new Cell(300, 100, Color.RED);
//choice1.addItem(t1);
//cells.add(t1);
Cell t2 = new Cell(475, 475, new Color(255, 0, 0, 100));
//choice1.addItem(t2);
cells.add(t2);
//choice2.addItem(t2);
//choice1.setRenderer(new ComboBoxRenderer());
//choice2.setRenderer(new ComboBoxRenderer());
speed.setValue(250);
delay = speed.getValue();
swingTimer = new Timer(delay, this);
//swingTimer.start();
}
@Override
public void actionPerformed(ActionEvent e)
{
time1 = System.nanoTime() - time0;
time0 = System.nanoTime();
if (swingTimer.isRunning())
{
speed.setEnabled(true);
//go.setText("Play ");
//swingTimer.stop();
}
else
{
speed.setEnabled(false);
swingTimer.start();
}
//canvas = new BufferedImage(1000, 1000, BufferedImage.TYPE_INT_ARGB);
//g2 = canvas.getGraphics();
for (int k = 0; k < cells.size(); k++)
{
Cell t = cells.get(k);
Cell rec = t.performTime();
if (t != rec) {
cells.add(rec);
}
//g2.drawImage(t.getImage(), t.getX(), t.getY(), this);
}
growing = true;
count ++;
//System.out.println("ACTION PERFORMED");
super.repaint();
}
@Override
public void stateChanged(ChangeEvent ce)
{
delay = speed.getValue();
}
@Override
public void paintComponent(Graphics g)
{
super.paintComponent(g);
//g.setColor(Color.BLACK);
int x = cells.size() - 1;
//g.drawImage(canvas, 0, 0, this);
for (int k = x; k >= 0; k--)
{
Cell t = cells.get(k);
/*if(k > cells.size() / 4) {
g.setColor(t.getColor());
g.fillOval(t.getX(), t.getY(), 50, 50);
} else*/
//if (draw || cells.size() > 100000000) {
g.drawImage(t.getImage(), t.getX(), t.getY(), this);
//swingTimer.stop();
//}
}
jLabel1.setText("Delay: " + delay + "ms. Hours since start: " + count + ". Cell Count: " + cells.size());
//System.out.println("Speed: " + (int) (delay / (time1 / 100000000.0)) + "%");
growing = false;
}
/** This method is called from within the constructor to initialize the form.
*
* WARNING: Do NOT modify this code by hand. The content of this method is
* always regenerated by the Form Editor.
*/
@SuppressWarnings("unchecked")
// <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
private void initComponents()
{
speed = new javax.swing.JSlider();
jLabel1 = new javax.swing.JLabel();
jButton1 = new javax.swing.JButton();
speed.setMaximum(1000);
speed.setMinimum(1);
speed.setPaintLabels(true);
speed.setPaintTicks(true);
speed.setSnapToTicks(true);
speed.addMouseListener(new java.awt.event.MouseAdapter()
{
public void mouseReleased(java.awt.event.MouseEvent evt)
{
speedMouseReleased(evt);
}
});
jLabel1.setFont(new java.awt.Font("Dialog", 1, 18)); // NOI18N
jLabel1.setText("Delay:");
jButton1.setFont(new java.awt.Font("Dialog", 1, 14)); // NOI18N
jButton1.setText("Start");
jButton1.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(java.awt.event.ActionEvent evt)
{
jButton1ActionPerformed(evt);
}
});
org.jdesktop.layout.GroupLayout layout = new org.jdesktop.layout.GroupLayout(this);
this.setLayout(layout);
layout.setHorizontalGroup(
layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(layout.createSequentialGroup()
.addContainerGap()
.add(speed, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(jLabel1)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED, 662, Short.MAX_VALUE)
.add(jButton1)
.add(18, 18, 18))
);
layout.setVerticalGroup(
layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(layout.createSequentialGroup()
.addContainerGap()
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.TRAILING, false)
.add(org.jdesktop.layout.GroupLayout.LEADING, layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jButton1, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, 0, Short.MAX_VALUE)
.add(jLabel1))
.add(org.jdesktop.layout.GroupLayout.LEADING, speed, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
.addContainerGap(967, Short.MAX_VALUE))
);
}// </editor-fold>//GEN-END:initComponents
private void speedMouseReleased(java.awt.event.MouseEvent evt)//GEN-FIRST:event_speedMouseReleased
{//GEN-HEADEREND:event_speedMouseReleased
// TODO add your handling code here:
delay = speed.getValue();
//swingTimer.setDelay(1000);
super.repaint();
}//GEN-LAST:event_speedMouseReleased
private void jButton1ActionPerformed(java.awt.event.ActionEvent evt)//GEN-FIRST:event_jButton1ActionPerformed
{//GEN-HEADEREND:event_jButton1ActionPerformed
// TODO add your handling code here:
swingTimer.setDelay(delay);
swingTimer.start();
}//GEN-LAST:event_jButton1ActionPerformed
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JButton jButton1;
private javax.swing.JLabel jLabel1;
private javax.swing.JSlider speed;
// End of variables declaration//GEN-END:variables
}
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